Ribosomal protein S9



Ribosomal protein S9 (RPS9) is one of the 22 proteins which belong to the small subunit of the bacterial ribosome. The images at the left and at the right correspond to one representative RPS9, i.e. the crystal structure of Ribosomal protein S9 from Thermus thermophilus (2zm6, chain I).

3D Structures of Ribosomal protein S9
Update June 2011

S9 in small ribosomal subunit
2zm6, 1n36, 1j5e, 3oge, 3ogy, 3ohc, 3ohd, 3ohy, 3oi0, 3oi2, 3oi4, 3oto - TtRPS5 in 30S ribosomal subunit+THX+16S RRNA – Thermus thermophilus

2vqe, 2vqf, 2uuc, 2e5l, 2uu9, 2uua, 2uub, 3pyn, 3pyq,  3pys,  3pyu - TtRPS5 in 30S ribosomal subunit+16S RRNA+RNA fragment

3kc4 – EcRPS5 in 30S ribosomal subunit - Escherichia coli

3i1m, 3i1o, 3df1, 3df3, 2vho, 2vhp, 2avy, 2aw7, 1pnx, 3oaq, 3oar, 3ofa, 3ofb, 3ofo, 3ofp, 3ofx, 3ofy, 3or9, 3ora - EcRPS5 in 30S ribosomal subunit+16S RRNA

1i94, 1fka - TtRPS5 in 30S ribosomal subunit+16S RRNA

1p87, 1p6g - EcRPS5 in 30S ribosomal subunit+16S RRNA – Cryo-EM

3bbn - RPS5 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach

S9 in small + large ribosomal subunit
1ml5 - EcRPS5 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM

S9 in small ribosomal subunit+ chain release factor
3mr8, 3ms0 – TtRPS9 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA

3d5a, 3d5c - TtRPS9 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA

2b64 - TtRPS9 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1

2b9m - TtRPS9 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2

2x9r, 2x9t, 2wh1, 2wh3 - TtRPS9 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA

3f1e, 3f1g - TtRPS9 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA

S9 in small ribosomal subunit+tRNA+mRNA
2hgi - TtRPS9 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet

2hgp - TtRPS9 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA

2i2p, 2i2u - EcRPS9 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA

2hgr - TtRPS9 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA

1yl4 – TtRPS9 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator

1pns - EcRPS9 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA

1xnq, 1xnr - TtRPS9 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA

S9 in small ribosomal subunit+A-site tRNA
2uxd, 2uxc - TtRPS9 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA

1n32, 1n33 - TtRPS9 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA

1n34 - TtRPS9 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA

1xmo, 1xmq - TtRPS9 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA

2uxb - TtRPS9 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA

S9 in small ribosomal subunit+P-site tRNA
3i8g - TtRPS9 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA

3i8h, 3i9b, 3i9d - TtRPS9 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA

1ibk - TtRPS9 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA

2wwl - EcRPS9 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA - Escherichia coli

3i1q - EcRPS9 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA

3i1s, 3i1z, 3i21 - EcRPS9 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA

S9 in small ribosomal subunit+A-site tRNA+P-site tRNA
1ibl, 1ibm - TtRPS9 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA

S9 in small ribosomal subunit+P-site tRNA+E-site tRNA
2ow8 - TtRPS9 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA

2b9o - TtRPS9 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA

2qnh - TtRPS9 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA

2wdg, 2wdh, 2wdk, 2wdm - TtRPS9 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe

S9 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA
2gy9, 2gyb - EcRPS9 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM

1jgo, 1jgp, 1jgq, 1gix - TtRPS9 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA

3e1a, 3e1c - EcRPS9 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA

S9 in small ribosomal subunit + antibiotics
1i95, 1i97, 2hhh,  2f4v -  TtRPS9 in 30S ribosomal subunit+16S RRNA+antibiotic

1hnw, 1hnx, 1hnz,  1fjg - TtRPS9 in 30S ribosomal subunit+16S RRNA+mRNA fragment+antibiotic

2qbb, 2qb9, 1vs5, 1vs7,  2qan,  2qal,  2qou,  2qow,  2qoy,  2qp0,  2z4k, 2z4m - EcRPS9 in 30S ribosomal subunit+16S RRNA+antibiotic

2j00, 2j02 - TtRPS9 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA

3knj, 3knh - TtRPS9 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+viomycin

3knl, 3knn - TtRPS9 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+capreomycin

S9 in small ribosomal subunit + ribosome recycling factor
2qbd, 2qbf - EcRPS9 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor

3r8n, 3r8o – EcRPS9 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA

2qbh, 2qbj - EcRPS9 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin

2v46, 2v48 - TtRPS9 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet

S9 in small ribosomal subunit + elongation factor
2wri, 2wrk, 2xsy, 2xuy - TtRPS9 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G

2wrn, 2wrq - TtRPS9 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4

3fic - TtRPS5 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A

3izv – EcRPS9 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+elongation factor TU

3izw – EcRPS9 in 30S ribosomal subunit+A-site tRNA Phe +mRNA +16S RRNA+elongation factor TU

2y0u, 2y0w,  2y0y,  2y10,  2y12,  2y14,  2y16,  2y18 - TtRPS8 in 30S subunit+THX+A-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU

2xqd – TtRPS9 in 30S ribosomal subunit+THX+E-site tRNA+mRNA +16S RRNA+elongation factor TU-B

3fih - EcRPS9 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU

3huw, 3huy - TtRPS9 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P

1s1h – yRPS9 in 40S ribosomal subunit+18S RRNA+elongation factor 2 – Cryo-EM – yeast

S9 in small ribosomal subunit + translation initiation factor
1i96 - TtRPS9 in 30S ribosomal subunit+THX+IF3+16S RRNA

1hr0 - TtRPS9 in 30S ribosomal subunit+THX+IF+16S RRNA

S9 in small ribosomal subunit + various proteins
3kiq, 3kis, 3kiu, 3kix - TtRPS9 in 30S ribosomal subunit+toxin RelE+16S RRNA

1voq, 1vos, 1vov, 1vox, 1voz - EcRPS9 in 30S ribosomal subunit+protein Y+16S RRNA

2xfz, 2xg1 - TtRPS9 in 30S ribosomal subunit+colicin E3+E-site tRNA+mRNA+16S RRNA

2zkq - RPS9 in 40S ribosomal subunit+RACK1+RNA – dog – Cryo EM

3iz6 - RPS9 in 40S ribosomal subunit+RACK1 – wheat – Cryo EM

3o2z, 3o30 - yRPS9 in 40S ribosomal subunit+18S RRNA+RACK1

3j00 – EcRPS9 + 16S RRNA + FTSQ + apolipoprotein A-I

S9 in part of small ribosomal subunit
3iy8 - EcRPS9+EcRPS5+EcRPS6+EcRPS9+EcRPS8 EcRPS11+EcRPS12+EcRPS15+EcRPS16+EcRPS17+EcRPS18+Leishmania taretolae mRNA

3jyv – RPS9+RPS0+RPS2+RPS3+RPS5+RPS11+RPS13+RPS14+RPS15+RPS16+RPS18+RPS20+RPS22+RPS23+RPS29+18S RRNA+RACK1+S19E+tRNA – Cryo-EM - Thermomyces lanuginosus

2r1g – TtRPS9+TtRPS12+TtRPS13+16S RRNA helices